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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
56
ChIP-seq
52
ATAC-seq
38
DNase-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
90
DNA accessibility
64
Transcription
56
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
70
February, 2021
53
October, 2019
35
February, 2023
34
June, 2019
9
May, 2019
8
July, 2019
4
February, 2020
2
August, 2021
Available data
169
bam
155
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
4
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
215
Homo sapiens
Biosample type
149
tissue
64
cell line
2
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
Genome assembly (visualization)
203
GRCh38
168
hg19
Lab
215
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
215 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
tissue
coronary artery
1
3
36
2
tibial nerve
5
24
1
2
tibial artery
1
18
1
2
muscle of leg
6
13
1
muscle of arm
17
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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