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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
69
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
control
7
narrow histone mark
Date released
27
December, 2018
19
October, 2019
15
January, 2019
12
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
72
bam
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
54
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
83
Homo sapiens
Biosample type
55
cell line
28
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
8
T1D
Genome assembly (visualization)
72
hg19
66
GRCh38
Lab
75
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
target.investigated_as!
control
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
54
1
primary cell
endothelial cell of umbilical vein
15
2
2
1
peripheral blood mononuclear cell
8
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