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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
ChIP-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
9
Transcription
3
DNA binding
2
DNA methylation
Target of assay
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
October, 2019
2
July, 2019
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
10
tsv
6
bam
2
bigWig
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
51
Homo sapiens
Biosample type
47
tissue
4
primary cell
Organ
237
pancreas
213
kidney
185
epithelium
145
heart
97
brain
89
bone element
72
liver
61
connective tissue
51
blood vessel
51
vasculature
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
187
GRCh38
hg19
Lab
51
AMP-T2D consortium
target.investigated_as!
control
assembly!
hg19
BIOSAMPLE
ASSAY
51 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
2
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
3
kidney capillary endothelial cell
1
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