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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
37
DNA accessibility
21
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
13
October, 2017
12
February, 2020
12
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
213
bam
213
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
23
tsv
16
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
240
tissue
12
primary cell
Organ
884
pancreas
679
liver
648
connective tissue
486
epithelium
467
adipose tissue
341
kidney
330
heart
252
brain
209
vasculature
204
blood vessel
159
bone element
132
artery
101
limb
84
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
18
ureter
18
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
214
GRCh38
155
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
control
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 77 more…
primary cell
choroid plexus epithelial cell
2
1
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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