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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
21
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
13
November, 2017
12
February, 2020
6
October, 2017
3
October, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
39
Homo sapiens
Biosample type
38
tissue
1
primary cell
Organ
270
pancreas
211
kidney
195
epithelium
149
heart
101
bone element
79
connective tissue
74
liver
61
vasculature
60
blood vessel
54
eye
47
artery
42
adipose tissue
39
brain
22
musculature of body
20
lung
16
skeleton
14
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
control
files.file_type!
bigWig
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
6
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
choroid plexus epithelial cell
1
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