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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
21
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
186
bigWig
183
bam
173
bed narrowPeak
99
tagAlign
97
bigBed narrowPeak
23
tsv
17
bed broadPeak
16
fastq
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
225
Homo sapiens
Biosample type
215
tissue
10
primary cell
Organ
889
pancreas
681
liver
634
connective tissue
476
epithelium
466
adipose tissue
300
heart
262
kidney
225
brain
207
vasculature
204
blood vessel
159
bone element
130
artery
73
limb
63
blood
63
bodily fluid
54
eye
49
musculature of body
32
nerve
30
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
225
AMP
Genome assembly (visualization)
184
GRCh38
138
hg19
Lab
225
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
control
month_released!
June, 2019
BIOSAMPLE
ASSAY
225 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
1
1
2
1
layer of hippocampus
20
substantia nigra
14
1
temporal lobe
13
1
1
angular gyrus
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
brain pericyte
1
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