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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
8
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
8
DNA binding
1
DNA methylation
Target of assay
7
histone
7
histone modification
7
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
25
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
33
bed narrowPeak
6
bam
6
bigBed narrowPeak
6
bigWig
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
61
tissue
4
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
65
AMP-T2D consortium
target.investigated_as!
control
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
1
14
6
4
retina
15
3
3
pigmented layer of retina
12
2
ovary
1
primary cell
retinal pigment epithelial cell
2
1
1
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