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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
49
DNA binding
44
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
49
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
5
July, 2019
Available data
93
bam
92
bed narrowPeak
87
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
98
Homo sapiens
Biosample type
98
tissue
Organ
494
liver
490
pancreas
363
epithelium
282
kidney
261
heart
238
brain
175
connective tissue
153
vasculature
148
blood vessel
98
limb
97
bone element
84
musculature of body
76
artery
69
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
lung
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
98
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
control
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
24
2
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
4
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