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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
49
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
May, 2019
5
July, 2019
3
February, 2020
Available data
91
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
99
Homo sapiens
Biosample type
99
tissue
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
99
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
control
organ_slims!
skeleton
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
24
2
5
1
tibial artery
18
2
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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