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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
103
DNA binding
53
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
53
October, 2019
32
June, 2019
27
December, 2018
15
January, 2019
12
November, 2018
8
January, 2021
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
1
January, 2018
Available data
151
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
54
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
168
Homo sapiens
Biosample type
105
tissue
55
cell line
8
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
8
T1D
Genome assembly (visualization)
151
hg19
150
GRCh38
Lab
160
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
24
2
1
5
tibial artery
18
2
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
cell line
GM12878
54
1
primary cell
peripheral blood mononuclear cell
8
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