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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
34
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
34
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
narrow histone mark
Date released
40
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
4
May, 2019
3
February, 2020
Available data
83
bam
78
bed narrowPeak
77
bigWig
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
90
tissue
Organ
820
pancreas
623
liver
616
connective tissue
455
adipose tissue
445
epithelium
327
kidney
308
heart
188
vasculature
184
blood vessel
159
bone element
138
brain
126
artery
90
limb
77
musculature of body
62
blood
62
bodily fluid
57
eye
24
nerve
22
embryo
20
lung
18
ureter
16
skeleton
15
spleen
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
83
GRCh38
82
hg19
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
control
narrow histone mark
BIOSAMPLE
ASSAY
90 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
16
1
5
muscle of leg
13
4
1
tibial artery
2
14
1
1
muscle of arm
17
gastrocnemius medialis
1
4
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