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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
33
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
23
August, 2017
10
July, 2019
8
June, 2019
6
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
21
bam
14
bigBed narrowPeak
13
bed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
55
Homo sapiens
Biosample type
44
tissue
11
primary cell
Organ
720
pancreas
654
liver
615
connective tissue
459
adipose tissue
371
epithelium
296
heart
218
brain
179
kidney
156
vasculature
153
blood vessel
147
bone element
83
artery
61
limb
55
musculature of body
54
blood
54
bodily fluid
30
embryo
29
nerve
28
eye
17
vein
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
target.investigated_as!
control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
19
1
4
1
1
muscle of leg
6
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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