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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
35
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
57
DNA binding
38
DNA accessibility
14
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
control
Date released
41
June, 2019
31
October, 2019
23
August, 2017
10
July, 2019
6
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
99
bigWig
87
bed narrowPeak
85
bam
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
14
tsv
13
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
122
Homo sapiens
Biosample type
110
tissue
12
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
Genome assembly (visualization)
104
hg19
84
GRCh38
Lab
122
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
24
2
5
1
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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