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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
35
DNase-seq
8
total RNA-seq
3
RRBS
2
ATAC-seq
2
Hi-C
2
small RNA-seq
1
snATAC-seq
Assay category
51
DNA binding
38
DNA accessibility
10
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
51
histone
51
histone modification
32
broad histone mark
19
narrow histone mark
Date released
41
June, 2019
31
October, 2019
15
August, 2017
6
May, 2019
5
July, 2019
4
March, 2020
1
January, 2018
1
May, 2022
Available data
98
bigWig
87
bed narrowPeak
84
bam
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
13
tagAlign
10
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
104
Homo sapiens
Biosample type
92
tissue
12
primary cell
Organ
656
pancreas
611
liver
588
connective tissue
426
adipose tissue
309
epithelium
188
heart
163
vasculature
158
blood vessel
158
brain
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
28
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
104
AMP
Genome assembly (visualization)
104
hg19
84
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
ATAC-seq
Hi-C
small RNA-seq
snATAC-seq
tissue
tibial nerve
24
2
4
1
muscle of leg
6
13
skeletal muscle tissue
13
1
2
1
1
1
muscle of arm
17
psoas muscle
2
2
+ See 2 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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