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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
12
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
69
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
92
Homo sapiens
Biosample type
79
tissue
13
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
75
hg19
54
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
pericardium fibroblast
1
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