Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
33
DNase-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
36
DNA accessibility
34
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
12
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
2
October, 2019
1
January, 2018
Available data
70
bigWig
61
bed narrowPeak
56
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
14
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
94
Homo sapiens
Biosample type
81
tissue
13
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
76
hg19
55
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 6 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
pericardium fibroblast
1
See all biosamples
Download