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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
2
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
36
DNA accessibility
33
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
6
July, 2019
6
May, 2019
3
March, 2020
1
January, 2018
1
May, 2022
1
October, 2019
Available data
62
bigWig
60
bed narrowPeak
48
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
82
Homo sapiens
Biosample type
72
tissue
10
primary cell
Organ
490
liver
414
pancreas
293
epithelium
234
brain
217
kidney
207
heart
168
connective tissue
147
vasculature
142
blood vessel
98
limb
97
bone element
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
67
hg19
47
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
assay_slims!
Transcription
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
19
4
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
1
See all biosamples
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