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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
19
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
39
DNA binding
19
Transcription
3
DNA accessibility
Target of assay
36
histone
36
histone modification
20
broad histone mark
control
16
narrow histone mark
3
transcription factor
Date released
31
October, 2019
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
60
bam
60
bigWig
41
bed narrowPeak
26
bigBed narrowPeak
20
fastq
19
tsv
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
62
Homo sapiens
Biosample type
32
tissue
22
in vitro differentiated cells
8
cell line
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
59
GRCh38
59
hg19
1
hg18
Lab
62
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
24
5
2
1
in vitro differentiated cells
pancreatic endoderm
13
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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