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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
386
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
225
November, 2017
171
May, 2020
46
December, 2017
43
August, 2017
40
May, 2022
34
November, 2018
29
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
553
bigWig
523
bam
385
bed narrowPeak
331
fastq
303
bigBed narrowPeak
174
tsv
59
bed broadPeak
59
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
625
Homo sapiens
Biosample type
313
tissue
287
cell line
13
primary cell
12
in vitro differentiated cells
Organ
884
pancreas
639
connective tissue
625
liver
486
epithelium
462
adipose tissue
339
kidney
327
heart
252
brain
209
vasculature
205
blood vessel
159
bone element
131
artery
105
limb
90
musculature of body
59
eye
53
blood
53
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
625
AMP
Genome assembly (visualization)
556
hg19
479
GRCh38
Lab
559
AMP-T2D consortium
40
Karen Mohlke, UNC
26
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
target.investigated_as!
control
RNA binding protein
BIOSAMPLE
ASSAY
625 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
101
167
20
2
3
1
1
1
1
1
right lobe of liver
6
3
1
2
1
2
cell line
HepG2
264
14
1
1
2
2
2
1
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
12
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