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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
275
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
470
DNA accessibility
275
DNA binding
38
DNA methylation
3D chromatin structure
Target of assay
593
histone modification
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
227
August, 2021
166
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
95
February, 2023
73
July, 2019
73
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
39
November, 2019
31
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1442
bam
1246
bigWig
1076
tsv
460
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
Organism
2126
Homo sapiens
Biosample type
2129
tissue
841
primary cell
619
cell line
278
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
428
pancreas
291
liver
278
kidney
210
heart
158
bone element
81
brain
78
blood vessel
78
vasculature
69
limb
54
eye
53
artery
51
musculature of body
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2034
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1361
GRCh38
1307
hg19
Lab
1820
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
assay_slims!
3D chromatin structure
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
2129 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
20
68
1
7
4
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
2
1
3
1
1
1
kidney
49
7
75
13
64
6
1
1
bone element
84
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