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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
14
DNA binding
Target of assay
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
8
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
82
bam
65
bigWig
58
tsv
54
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
121
Homo sapiens
Biosample type
66
cell line
53
tissue
2
primary cell
Organ
786
pancreas
685
liver
605
connective tissue
459
adipose tissue
423
epithelium
323
kidney
293
heart
160
vasculature
159
bone element
155
blood vessel
121
artery
96
brain
69
limb
68
blood
68
bodily fluid
58
eye
57
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
121
AMP-T2D consortium
target.investigated_as!
histone
assay_slims!
3D chromatin structure
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
2
tibial artery
1
1
5
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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