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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1035
total RNA-seq
272
ChIP-seq
223
ATAC-seq
174
DNase-seq
172
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1223
Transcription
429
DNA accessibility
272
DNA binding
38
DNA methylation
3D chromatin structure
Target of assay
608
histone modification
histone
318
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
225
August, 2021
166
May, 2020
161
August, 2017
161
June, 2019
120
July, 2018
72
July, 2019
66
May, 2022
65
October, 2019
60
February, 2023
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
39
November, 2019
31
March, 2020
26
November, 2018
23
February, 2020
23
May, 2019
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
May, 2024
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1428
bam
1244
bigWig
1072
tsv
423
bed narrowPeak
304
fastq
244
bigBed narrowPeak
189
bed bed3+
174
bed broadPeak
172
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
Organism
2078
Homo sapiens
Biosample type
2081
tissue
839
primary cell
554
cell line
278
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
428
pancreas
291
liver
278
kidney
215
heart
158
bone element
81
brain
78
blood vessel
78
vasculature
69
limb
54
eye
artery
51
musculature of body
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1986
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1324
GRCh38
1300
hg19
Lab
1767
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
assay_slims!
3D chromatin structure
organ_slims!
artery
BIOSAMPLE
ASSAY
2081 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
20
68
1
7
4
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
2
1
3
1
1
1
kidney
49
7
75
13
64
6
1
1
bone element
84
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