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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
DNase-seq
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
421
bigWig
401
tsv
42
fastq
9
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tagAlign
Organism
456
Homo sapiens
Biosample type
454
tissue
2
primary cell
1
in vitro differentiated cells
Organ
702
pancreas
632
liver
593
connective tissue
457
adipose tissue
342
epithelium
179
kidney
173
heart
159
bone element
148
vasculature
145
blood vessel
115
artery
64
brain
54
eye
53
blood
53
bodily fluid
37
limb
29
musculature of body
25
embryo
17
nerve
16
skeleton
11
lung
10
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
457
AMP
Genome assembly (visualization)
422
hg19
421
GRCh38
Lab
457
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone
assay_title!
DNase-seq
single cell RNA-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
457 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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