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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
31
DNA binding
20
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
14
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
73
bam
52
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
22
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
95
Homo sapiens
Biosample type
77
tissue
18
primary cell
Organ
793
pancreas
686
liver
603
connective tissue
456
adipose tissue
431
epithelium
323
kidney
290
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
95
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
45
GRCh38
43
hg19
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
95 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
frontal cortex
2
2
1
caudate nucleus
1
2
1
Ammon's horn
1
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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