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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
6
3D chromatin structure
6
DNA binding
6
DNA methylation
3
Transcription
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
8
July, 2019
7
August, 2017
2
March, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
39
bam
37
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
2
tsv
1
txt
Organism
56
Homo sapiens
Biosample type
51
tissue
5
primary cell
Organ
497
liver
391
pancreas
300
epithelium
262
kidney
221
heart
127
connective tissue
103
vasculature
98
blood vessel
96
bone element
80
brain
68
blood
68
bodily fluid
66
limb
65
artery
59
adipose tissue
56
musculature of body
35
eye
19
lung
18
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
1
pericardium
1
pituitary gland
1
skin of body
Project
56
AMP
Genome assembly (visualization)
42
hg19
36
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone
assay_title!
total RNA-seq
pCHi-C
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
4
1
1
1
1
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
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