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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
29
DNA accessibility
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
18
February, 2023
17
May, 2021
16
January, 2021
Organism
51
Homo sapiens
Biosample type
24
primary cell
22
tissue
5
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2023
AMP
232
HPAP
51
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Lab
51
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
51 results
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snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples