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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
52
single cell RNA-seq
27
snATAC-seq
10
ATAC-seq
6
WGBS
3
Hi-C
Assay category
52
Transcription
37
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
45
February, 2021
43
September, 2020
7
August, 2020
3
October, 2022
Available data
77
fastq
19
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
98
Homo sapiens
Biosample type
98
primary cell
Organ
19
epithelium
19
pancreas
Project
98
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
1819
AMP-T2D consortium
98
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
76
Kyle Gaulton, UCSD
47
KPMP
25
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
target.investigated_as!
histone
assay_title!
total RNA-seq
month_released!
May, 2022
BIOSAMPLE
ASSAY
98 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
7
6
1
pancreatic beta cell
3
1
pancreatic acinar cell
1
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