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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
252
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
404
DNA accessibility
252
DNA binding
96
Transcription
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
136
June, 2019
101
February, 2021
87
August, 2021
72
August, 2017
51
October, 2019
47
September, 2023
46
February, 2023
44
October, 2018
43
December, 2017
40
May, 2022
32
July, 2019
26
November, 2018
24
March, 2020
23
May, 2020
21
November, 2019
19
April, 2020
18
May, 2019
14
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
September, 2017
5
April, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
474
bam
387
bed narrowPeak
300
bigWig
215
bigBed narrowPeak
201
fastq
166
bed bed3+
151
bed broadPeak
149
bigBed broadPeak
98
txt
64
xls
52
tagAlign
49
tsv
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
907
Homo sapiens
Biosample type
910
tissue
597
primary cell
497
cell line
146
in vitro differentiated cells
8
stem cell
Organ
229
kidney
heart
143
pancreas
122
liver
96
bone element
72
blood vessel
72
vasculature
66
limb
64
brain
59
adipose tissue
59
connective tissue
52
musculature of body
51
artery
35
eye
20
lung
19
spleen
18
ureter
14
nerve
13
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
822
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
379
GRCh38
375
hg19
Lab
680
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
assay_title!
total RNA-seq
organ_slims!
heart
BIOSAMPLE
ASSAY
910 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
7
75
13
64
6
1
1
1
liver
81
20
2
1
1
3
1
1
1
islet of Langerhans
20
68
1
7
4
3
1
1
4
bone element
84
body of pancreas
18
4
4
2
2
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