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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
8
ATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
17
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
22
October, 2019
6
February, 2021
5
July, 2019
1
May, 2019
Available data
62
bam
44
bed narrowPeak
39
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
66
tissue
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
45
GRCh38
44
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_title!
total RNA-seq
organ_slims!
heart
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
1
tibial nerve
2
11
1
tibial artery
2
5
1
gastrocnemius medialis
4
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