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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
22
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
0
CRISPR genome editing followed by DNA sequencing
Assay category
22
DNA binding
Target of assay
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
13
October, 2019
5
April, 2019
2
June, 2019
2
May, 2019
Available data
22
bam
9
bed narrowPeak
9
bigWig
2
bigBed narrowPeak
Organism
22
Homo sapiens
Biosample type
10
cell line
7
tissue
5
primary cell
Organ
450
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
22
AMP
Genome assembly (visualization)
9
GRCh38
9
hg19
Lab
22
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
tissue
kidney
7
primary cell
epithelial cell of proximal tubule
3
kidney epithelial cell
2
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