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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ATAC-seq
263
single cell RNA-seq
245
total RNA-seq
87
RNA microarray
84
snATAC-seq
61
ChIP-seq
57
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
61
DNA binding
1
DNA methylation
Target of assay
histone
232
histone modification
123
broad histone mark
109
narrow histone mark
32
control
29
transcription factor
11
RNA binding protein
Date released
21
May, 2021
19
August, 2017
15
August, 2021
5
May, 2024
1
November, 2017
1
October, 2017
Available data
bam
628
fastq
522
bigWig
475
bed narrowPeak
410
bigBed narrowPeak
77
tagAlign
49
bed broadPeak
49
bigBed broadPeak
28
bed bed3+
3
tar
Organism
62
Homo sapiens
Biosample type
23
tissue
19
in vitro differentiated cells
16
cell line
4
primary cell
Organ
19
liver
7
connective tissue
6
pancreas
5
adipose tissue
5
heart
3
musculature of body
1
brain
Project
62
AMP
Genome assembly (visualization)
14
hg19
5
GRCh38
Lab
22
AMP-T2D consortium
20
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
target.investigated_as!
histone
files.file_type!
bam
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
DNAme array
tissue
islet of Langerhans
6
left cardiac atrium
5
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
+ See 1 more…
in vitro differentiated cells
embryonic stem cell
17
adipocyte
2
cell line
HepG2
16
primary cell
CD8-positive, alpha-beta T cell
3
monocyte
1
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