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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
36
ChIP-seq
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
0
pCHi-C
Assay category
36
DNA binding
Target of assay
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
12
August, 2017
5
December, 2017
4
June, 2019
4
November, 2017
3
November, 2019
3
October, 2019
2
May, 2019
2
May, 2021
1
August, 2021
Available data
36
bam
21
fastq
11
bigWig
9
bed narrowPeak
7
bigBed narrowPeak
3
tagAlign
2
bed broadPeak
2
bigBed broadPeak
Organism
36
Homo sapiens
Biosample type
26
primary cell
7
in vitro differentiated cells
3
cell line
Organ
453
liver
80
connective tissue
68
pancreas
59
blood
59
bodily fluid
43
adipose tissue
40
heart
36
epithelium
33
brain
32
vasculature
30
blood vessel
24
kidney
17
limb
15
spleen
14
artery
11
nerve
10
embryo
7
musculature of body
6
eye
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
epithelial cell of proximal tubule
3
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
+ See 4 more…
in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
3
See all biosamples
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