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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
446
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
60
November, 2018
27
December, 2018
17
January, 2019
16
October, 2019
15
August, 2021
8
February, 2021
3
November, 2019
Available data
430
bam
404
fastq
374
bigWig
357
bed narrowPeak
333
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
9
tagAlign
3
tar
Organism
446
Homo sapiens
Biosample type
446
cell line
275
tissue
86
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
360
liver
59
blood
59
bodily fluid
10
kidney
9
pancreas
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
Project
446
AMP
Genome assembly (visualization)
370
hg19
314
GRCh38
Lab
431
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
446 results
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ChIP-seq
cell line
HepG2
360
GM12878
59
Panc1
6
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
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