Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
275
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
275
DNA binding
178
DNA accessibility
Target of assay
593
histone modification
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
55
August, 2017
44
October, 2018
43
December, 2017
31
October, 2019
26
May, 2019
23
May, 2020
20
April, 2019
19
November, 2018
12
November, 2017
7
December, 2018
6
September, 2017
3
October, 2017
1
January, 2019
Available data
434
bam
266
bigWig
248
bed narrowPeak
242
bigBed narrowPeak
192
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
157
fastq
52
tagAlign
Organism
452
Homo sapiens
Biosample type
453
tissue
448
cell line
87
in vitro differentiated cells
73
primary cell
1
stem cell
Organ
90
liver
75
kidney
53
limb
52
brain
51
pancreas
50
heart
43
adipose tissue
43
connective tissue
36
musculature of body
24
blood vessel
24
vasculature
18
ureter
15
spleen
13
nerve
12
artery
3
eye
Project
453
AMP
Genome assembly (visualization)
269
GRCh38
253
hg19
Lab
453
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
18
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
453 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
tissue
liver
81
2
body of pancreas
18
4
islet of Langerhans
20
1
heart
2
18
kidney
7
13
+ See 63 more…
See all biosamples
Download