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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
275
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
275
DNA binding
16
3D chromatin structure
Target of assay
593
histone modification
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
53
August, 2017
44
October, 2018
43
December, 2017
28
October, 2019
26
May, 2019
23
May, 2020
20
April, 2019
12
November, 2017
10
November, 2018
7
December, 2018
7
March, 2020
6
September, 2017
4
July, 2019
3
October, 2017
2
August, 2021
1
January, 2019
1
March, 2019
1
November, 2019
Available data
257
bam
147
fastq
89
bigWig
71
bed narrowPeak
65
bigBed narrowPeak
52
tagAlign
16
bed bed3+
11
hic
10
bedpe bed3+
1
bedpe
Organism
290
Homo sapiens
Biosample type
450
cell line
291
tissue
90
in vitro differentiated cells
52
primary cell
1
stem cell
Organ
87
liver
48
pancreas
41
adipose tissue
41
connective tissue
26
heart
25
brain
21
limb
20
blood vessel
20
vasculature
14
spleen
11
nerve
10
musculature of body
8
artery
8
kidney
Project
291
AMP
Genome assembly (visualization)
103
hg19
92
GRCh38
Lab
288
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
291 results
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Clear Filters
ChIP-seq
Hi-C
tissue
liver
81
1
islet of Langerhans
20
3
body of pancreas
18
spleen
14
heart left ventricle
11
1
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