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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
275
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
275
DNA binding
Target of assay
593
histone modification
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
53
August, 2017
44
October, 2018
43
December, 2017
31
October, 2019
26
May, 2019
23
May, 2020
20
April, 2019
20
March, 2020
12
November, 2017
10
November, 2018
7
December, 2018
6
September, 2017
3
October, 2017
1
January, 2019
1
May, 2021
Available data
257
bam
147
fastq
89
bigWig
71
bed narrowPeak
65
bigBed narrowPeak
52
tagAlign
20
tsv
16
bed bed3+
Organism
299
Homo sapiens
Biosample type
452
cell line
300
tissue
91
in vitro differentiated cells
59
primary cell
5
stem cell
Organ
87
liver
45
pancreas
42
adipose tissue
42
connective tissue
27
brain
26
heart
20
blood vessel
20
vasculature
17
limb
15
spleen
11
nerve
8
artery
7
kidney
5
musculature of body
4
eye
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
299
AMP
1
T1D
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
299
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
18
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
300 results
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Clear Filters
ChIP-seq
pCHi-C
tissue
liver
81
1
islet of Langerhans
20
4
body of pancreas
18
spleen
14
1
heart left ventricle
11
1
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