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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1035
total RNA-seq
272
ChIP-seq
223
ATAC-seq
174
DNase-seq
172
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
272
DNA binding
Target of assay
608
histone modification
histone
318
narrow histone mark
289
broad histone mark
178
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
53
August, 2017
44
October, 2018
43
December, 2017
23
May, 2019
23
May, 2020
22
October, 2019
20
April, 2019
12
November, 2017
10
November, 2018
7
December, 2018
6
September, 2017
5
May, 2024
3
October, 2017
1
January, 2019
Available data
249
bam
147
fastq
93
bigWig
75
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
16
bed bed3+
Organism
271
Homo sapiens
Biosample type
440
cell line
272
tissue
86
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
86
liver
44
pancreas
41
adipose tissue
41
connective tissue
28
heart
25
brain
19
blood vessel
19
vasculature
17
limb
14
spleen
11
nerve
artery
7
kidney
4
musculature of body
Project
272
AMP
Genome assembly (visualization)
96
GRCh38
91
hg19
Lab
267
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone
organ_slims!
artery
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
tissue
liver
81
islet of Langerhans
20
body of pancreas
18
spleen
14
subcutaneous adipose tissue
12
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