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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
277
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
277
DNA binding
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
Date released
53
August, 2017
44
October, 2018
43
December, 2017
27
October, 2019
26
May, 2019
23
May, 2020
20
April, 2019
12
November, 2017
7
December, 2018
7
November, 2018
6
September, 2017
5
May, 2024
3
October, 2017
1
January, 2019
Available data
254
bam
144
fastq
91
bigWig
73
bed narrowPeak
62
bigBed narrowPeak
52
tagAlign
16
bed bed3+
Organism
276
Homo sapiens
Biosample type
444
cell line
277
tissue
86
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
86
liver
44
pancreas
41
adipose tissue
41
connective tissue
28
heart
25
brain
19
blood vessel
19
vasculature
17
limb
11
nerve
11
spleen
8
artery
7
kidney
4
musculature of body
Project
277
AMP
Genome assembly (visualization)
94
GRCh38
89
hg19
Lab
272
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone
other post-translational modification
BIOSAMPLE
ASSAY
277 results
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Clear Filters
ChIP-seq
tissue
liver
81
islet of Langerhans
20
body of pancreas
18
subcutaneous adipose tissue
12
white adipose tissue
12
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