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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ATAC-seq
263
single cell RNA-seq
242
total RNA-seq
86
RNA microarray
84
snATAC-seq
56
ChIP-seq
54
pCHi-C
53
WGBS
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
56
DNA binding
Target of assay
histone
201
histone modification
103
broad histone mark
98
narrow histone mark
29
transcription factor
27
control
11
RNA binding protein
Date released
20
May, 2021
15
August, 2021
14
August, 2017
5
May, 2024
1
November, 2017
1
October, 2017
Available data
bam
592
fastq
505
bigWig
470
bed narrowPeak
405
bigBed narrowPeak
76
tagAlign
49
bed broadPeak
49
bigBed broadPeak
24
bed bed3+
3
tar
Organism
56
Homo sapiens
Biosample type
19
in vitro differentiated cells
18
tissue
16
cell line
3
primary cell
Organ
19
liver
7
connective tissue
6
pancreas
adipose tissue
5
heart
3
musculature of body
1
brain
Project
56
AMP
Genome assembly (visualization)
14
hg19
5
GRCh38
Lab
20
Kyle Gaulton, UCSD
16
AMP-T2D consortium
15
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
target.investigated_as!
histone
organ_slims!
adipose tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
17
adipocyte
2
tissue
islet of Langerhans
6
left cardiac atrium
5
liver
3
skeletal muscle tissue
3
brain
1
cell line
HepG2
16
primary cell
CD8-positive, alpha-beta T cell
3
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