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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
46
ATAC-seq
29
ChIP-seq
9
DNase-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
29
DNA binding
Target of assay
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
14
May, 2019
7
October, 2019
6
February, 2021
2
November, 2017
Available data
29
bam
9
bigWig
8
bed narrowPeak
6
tagAlign
4
bigBed narrowPeak
2
fastq
1
bed broadPeak
1
bigBed broadPeak
Organism
29
Homo sapiens
Biosample type
19
tissue
6
cell line
4
primary cell
Organ
450
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
29
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
29
AMP-T2D consortium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
tissue
thoracic aorta
5
tibial artery
5
ascending aorta
4
coronary artery
3
aorta
2
cell line
smooth muscle cell of the coronary artery
6
primary cell
brain microvascular endothelial cell
2
endothelial cell of umbilical vein
2
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