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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
75
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
75
DNA binding
Target of assay
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
23
October, 2018
4
June, 2019
Available data
68
bam
64
fastq
40
bigWig
23
bed narrowPeak
11
bed bed3+
6
bigBed narrowPeak
3
tagAlign
Organism
75
Homo sapiens
Biosample type
41
tissue
30
in vitro differentiated cells
4
primary cell
Organ
450
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
75
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
75
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
tissue
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
subcutaneous abdominal adipose tissue
5
adipose tissue
1
in vitro differentiated cells
adipocyte
30
primary cell
cardiac fibroblast
3
mesenchymal stem cell
1
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