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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
145
Transcription
136
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
134
May, 2022
47
September, 2023
45
February, 2021
43
September, 2020
19
April, 2020
18
February, 2023
17
May, 2021
16
January, 2021
7
August, 2020
5
March, 2023
3
October, 2022
Available data
153
zippedFastqFolder
77
fastq
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
349
Homo sapiens
Biosample type
257
primary cell
88
tissue
7
cell line
2
stem cell
Organ
120
pancreas
99
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
232
HPAP
51
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
11
GRCh38
3
hg19
Lab
232
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
award.project!
AMP
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
354 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
+ See 16 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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