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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
141
single cell RNA-seq
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
145
Transcription
60
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
113
May, 2022
47
September, 2023
43
September, 2020
18
February, 2021
17
May, 2021
16
February, 2023
9
April, 2020
7
August, 2020
5
March, 2023
3
October, 2022
Available data
132
zippedFastqFolder
50
fastq
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
274
Homo sapiens
Biosample type
201
primary cell
68
tissue
7
cell line
2
stem cell
Organ
110
pancreas
99
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
184
HPAP
47
KPMP
33
T1D
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
11
GRCh38
3
hg19
Lab
184
Klaus Kaestner, Upenn
47
KPMP
33
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
award.project!
AMP
assay_title!
total RNA-seq
snATAC-seq
BIOSAMPLE
ASSAY
278 results
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single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
CD4-positive, alpha-beta T cell
2
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tissue
kidney
47
islet of Langerhans
11
lung
9
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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