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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
20
snATAC-seq
11
ATAC-seq
9
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
67
Transcription
31
DNA accessibility
Target of assay
histone
4
histone modification
4
narrow histone mark
Date released
47
September, 2023
23
February, 2023
19
April, 2020
8
January, 2021
4
March, 2020
2
March, 2023
1
May, 2021
Available data
2
bam
2
bigWig
2
tsv
Organism
101
Homo sapiens
Biosample type
445
primary cell
95
tissue
9
cell line
2
stem cell
Organ
47
kidney
30
pancreas
19
lung
2
epithelium
1
thymus
Project
AMP
47
KPMP
36
T1D
19
LungMap
2
community
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
47
KPMP
32
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone
award.project!
AMP
BIOSAMPLE
ASSAY
104 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
6
11
7
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
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