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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
89
single cell RNA-seq
39
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
290
Transcription
60
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
99
February, 2023
68
May, 2021
47
September, 2023
45
February, 2021
45
May, 2020
40
September, 2020
19
April, 2020
January, 2021
7
August, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
169
fastq
zippedFastqFolder
108
bigWig
104
tsv
98
bam
4
hic
3
bedpe bed3+
3
cool
Organism
377
Homo sapiens
Biosample type
284
primary cell
87
tissue
9
cell line
2
stem cell
Organ
94
pancreas
74
epithelium
47
kidney
19
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
171
HPAP
140
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
109
GRCh38
101
hg19
Lab
171
Klaus Kaestner, Upenn
136
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
target.investigated_as!
histone
award.project!
AMP
month_released!
January, 2021
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
382 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
11
lung
9
10
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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