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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
42
ChIP-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
163
Transcription
42
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
21
May, 2021
13
October, 2019
12
February, 2023
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
November, 2018
Available data
310
bam
277
bigWig
168
tsv
167
fastq
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
2
tagAlign
1
bed bed3
1
bedpe bed3+
1
tar
Organism
406
Homo sapiens
Biosample type
2050
tissue
615
cell line
406
primary cell
282
in vitro differentiated cells
6
stem cell
Organ
188
epithelium
136
pancreas
30
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
406
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
299
hg19
231
GRCh38
Lab
401
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
32
inconsistent ontology term
1
audit script error
target.investigated_as!
histone
BIOSAMPLE
ASSAY
406 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
12
10
6
pancreatic alpha cell
6
12
10
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
5
12
4
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