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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
34
ATAC-seq
20
ChIP-seq
18
snATAC-seq
17
pCHi-C
Assay category
115
Transcription
52
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
45
May, 2020
24
May, 2022
18
February, 2023
16
January, 2021
Available data
120
bam
106
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
204
Homo sapiens
Biosample type
125
primary cell
52
tissue
27
in vitro differentiated cells
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
147
T1D
57
AMP
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
2488
AMP-T2D consortium
324
Klaus Kaestner, Upenn
204
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
target.investigated_as!
histone
biosample_type!
cell line
BIOSAMPLE
ASSAY
204 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
17
See all biosamples
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