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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
400
DNA binding
189
DNA accessibility
Target of assay
395
transcription factor
histone
344
histone modification
221
broad histone mark
123
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
236
November, 2017
163
June, 2019
73
November, 2018
33
December, 2017
30
December, 2018
15
October, 2018
14
January, 2019
9
October, 2019
5
April, 2019
5
August, 2017
4
May, 2019
2
July, 2019
Available data
2202
bam
1913
bigWig
1330
tsv
883
bed narrowPeak
793
fastq
589
bigBed narrowPeak
224
bed broadPeak
222
bigBed broadPeak
214
bed bed3+
161
txt
75
tagAlign
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
589
Homo sapiens
Biosample type
335
cell line
249
tissue
primary cell
5
in vitro differentiated cells
Organ
321
liver
70
kidney
53
blood
53
bodily fluid
36
limb
34
heart
32
musculature of body
28
brain
20
pancreas
18
ureter
12
connective tissue
9
adipose tissue
8
blood vessel
8
vasculature
7
spleen
5
artery
3
epithelium
3
eye
2
nerve
Project
589
AMP
Genome assembly (visualization)
569
hg19
550
GRCh38
Lab
589
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
biosample_type!
primary cell
BIOSAMPLE
ASSAY
589 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
280
GM12878
53
Panc1
1
glomerular visceral epithelial cell
1
tissue
liver
33
2
heart
18
muscle of arm
17
brain
14
kidney
13
1
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in vitro differentiated cells
adipocyte
1
2
hepatocyte
2
See all biosamples
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