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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
3
DNase-seq
1
ATAC-seq
Assay category
317
DNA binding
4
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
236
November, 2017
51
November, 2018
33
December, 2017
1
August, 2017
Available data
593
bam
532
bigWig
421
fastq
358
bed narrowPeak
321
bigBed narrowPeak
169
tsv
47
bed broadPeak
47
bigBed broadPeak
27
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
321
Homo sapiens
Biosample type
280
cell line
39
tissue
2
in vitro differentiated cells
primary cell
Organ
321
liver
70
kidney
53
blood
53
bodily fluid
36
limb
34
heart
32
musculature of body
28
brain
20
pancreas
18
ureter
12
connective tissue
9
adipose tissue
8
blood vessel
8
vasculature
7
spleen
5
artery
3
epithelium
3
eye
2
nerve
Project
321
AMP
Genome assembly (visualization)
317
hg19
289
GRCh38
Lab
321
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
biosample_type!
primary cell
BIOSAMPLE
ASSAY
321 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
280
tissue
liver
33
2
right lobe of liver
2
1
1
in vitro differentiated cells
hepatocyte
2
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