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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
667
February, 2021
312
November, 2017
298
August, 2021
192
August, 2017
171
May, 2021
167
May, 2020
163
June, 2019
120
July, 2018
117
February, 2023
105
October, 2019
87
November, 2018
77
July, 2019
66
May, 2022
63
December, 2017
60
March, 2020
51
November, 2019
47
September, 2023
44
October, 2018
35
December, 2018
26
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
15
May, 2023
11
October, 2017
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
87
bed narrowPeak
64
xls
57
txt
32
bam
28
bigWig
7
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
297
Homo sapiens
Biosample type
229
tissue
41
cell line
28
in vitro differentiated cells
primary cell
Organ
130
kidney
92
heart
28
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
298
AMP
Genome assembly (visualization)
89
GRCh38
42
hg19
Lab
133
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone
biosample_type!
primary cell
BIOSAMPLE
ASSAY
298 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
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